6WWZ Membrane Protein date May 09, 2020
title Cryo-Em Structure Of The Human Chemokine Receptor Ccr6 In Co Ccl20 And A Go Protein
authors D.J.Wasilko, Z.L.Johnson, M.Ammirati, S.Han, H.Wu
compound source
Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Gnb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: C-C Motif Chemokine 20
Chain: C
Synonym: Beta-Chemokine Exodus-1,Cc Chemokine Larc,Liver An Activation-Regulated Chemokine,Macrophage Inflammatory Prot Alpha,Mip-3-Alpha,Small-Inducible Cytokine A20;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl20, Larc, Mip3a, Scya20
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: Y
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(O) Subunit A Guanine Nucleotide-Binding Protein G(O) Subunit Alpha;
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnao1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Scfv16
Chain: S
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: C-C Chemokine Receptor Type 6,C-C Chemokine Recep 6;
Chain: R
Synonym: Ccr-6,Chemokine Receptor-Like 3,Ckr-L3,Dry6,G-Prot Coupled Receptor 29,Gpr-Cy4,Gprcy4,Larc Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccr6, Ckrl3, Cmkbr6, Gpr29, Strl22
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.34 Å
Gene
Ontology
ChainFunctionProcessComponent
B


C


R
  • chemokine receptor activity
  • C-C chemokine receptor activ...


  • Y


    Primary referenceStructural basis for chemokine receptor CCR6 activation by the endogenous protein ligand CCL20., Wasilko DJ, Johnson ZL, Ammirati M, Che Y, Griffor MC, Han S, Wu H, Nat Commun. 2020 Jun 15;11(1):3031. doi: 10.1038/s41467-020-16820-6. PMID:32541785
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (6wwz.pdb1.gz) 193 Kb
  • CSU: Contacts of Structural Units for 6WWZ
  • Retrieve 6WWZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WWZ from S2C, [Save to disk]
  • View 6WWZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WWZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wwz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wwz_A] [6wwz_B] [6wwz_Y] [6wwz_S] [6wwz_C] [6wwz_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WWZ
  • Community annotation for 6WWZ at PDBWiki (http://pdbwiki.org)

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