6WX8 Nuclear Protein date May 10, 2020
title Sox2 Bound To Importin-Alpha 3
authors J.Bikshapathi, M.Stewart, J.K.Forwood, D.Aragao, N.Roman
compound source
Molecule: Importin Subunit Alpha-3
Chain: A, C
Synonym: Importin Alpha Q1,Qip1,Karyopherin Subunit Alpha-4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kpna4, Qip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Sox-2
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sox2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.580 118.990 94.870 90.00 128.77 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (6wx8.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (6wx8.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 6WX8
  • CSU: Contacts of Structural Units for 6WX8
  • Structure Factors (549 Kb)
  • Retrieve 6WX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WX8 from S2C, [Save to disk]
  • View 6WX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WX8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wx8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wx8_A] [6wx8_D] [6wx8_B] [6wx8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WX8
  • Community annotation for 6WX8 at PDBWiki (http://pdbwiki.org)

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