6X0A Toxin date May 15, 2020
title X-Ray Structure Of A Chimeric Parde Toxin-Antitoxin Complex Mesorhizobium Opportunistum
authors T.L.Lite, R.A.Grant, M.T.Laub
compound source
Molecule: Plasmid Stabilization System
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Engineered: Yes
 Organism_scientific: Mesorhizobium Opportunistum (Strain Lm Hambi 3007 Wsm2075);
Organism_taxid: 536019
Strain: Lmg 24607 Hambi 3007 Wsm2075
Gene: Mesop_5171
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Putative Addiction Module Antidote Protein, Copg Family Chimera;
Chain: a, b, c, d, e, f, g, h, I, j, k, l, m, n, o, p, q, r
Engineered: Yes
Organism_scientific: Mesorhizobium Opportunistum (Strain Lm Hambi 3007 Wsm2075);
Organism_taxid: 536019
Strain: Lmg 24607 Hambi 3007 Wsm2075
Gene: Mesop_5599, Mesop_5170
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.255 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.540 148.540 195.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand P4G enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1600 Kb) [Save to disk]
  • Biological Unit Coordinates (6x0a.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (6x0a.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (6x0a.pdb3.gz) 92 Kb
  • Biological Unit Coordinates (6x0a.pdb4.gz) 91 Kb
  • Biological Unit Coordinates (6x0a.pdb5.gz) 88 Kb
  • Biological Unit Coordinates (6x0a.pdb6.gz) 89 Kb
  • Biological Unit Coordinates (6x0a.pdb7.gz) 90 Kb
  • Biological Unit Coordinates (6x0a.pdb8.gz) 87 Kb
  • Biological Unit Coordinates (6x0a.pdb9.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6X0A
  • CSU: Contacts of Structural Units for 6X0A
  • Structure Factors (579 Kb)
  • Retrieve 6X0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6X0A from S2C, [Save to disk]
    • View 6X0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6X0A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6x0a_G] [6x0a_f] [6x0a_Q] [6x0a_B] [6x0a_i] [6x0a_J] [6x0a_H] [6x0a_h] [6x0a_N] [6x0a_E] [6x0a_m] [6x0a_l] [6x0a_g] [6x0a_d] [6x0a_L] [6x0a_o] [6x0a_b] [6x0a_K] [6x0a_q] [6x0a_I] [6x0a_M] [6x0a_D] [6x0a_k] [6x0a_p] [6x0a_a] [6x0a_c] [6x0a_n] [6x0a_A] [6x0a_C] [6x0a_O] [6x0a_R] [6x0a_F] [6x0a_P] [6x0a_r] [6x0a_e] [6x0a_j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6X0A
  • Community annotation for 6X0A at PDBWiki (http://pdbwiki.org)

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