6XBZ Transferase date Jun 07, 2020
title Structure Of The Human Cdk-Activating Kinase
authors B.J.Greber, J.M.Perez-Bertoldi, K.Lim, A.T.Iavarone, D.B.Toso, E.
compound source
Molecule: Cdk-Activating Kinase Assembly Factor Mat1
Chain: H
Synonym: Cdk7cyclin-H Assembly Factor,Cyclin-G1-Interactin Menage A Trois,Ring Finger Protein 66,Ring Finger Protein M P36;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mnat1, Cap35, Mat1, Rnf66
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High5

Molecule: Cyclin-H
Chain: I
Synonym: Mo15-Associated Protein,P34,P37
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnh
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High5

Molecule: Cyclin-Dependent Kinase 7
Chain: J
Synonym: 39 Kda Protein Kinase,P39 Mo15,Cdk-Activating Kina Division Protein Kinase 7,Serinethreonine-Protein Kinase 1 Basal Transcription Factor Complex Kinase Subunit;
Ec: 2.7.11.22,2.7.11.23
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk7, Cak, Cak1, Cdkn7, Mo15, Stk1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High5
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.80 Å
ligand AGS, MG, SEP enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


I


J


Primary referenceThe cryoelectron microscopy structure of the human CDK-activating kinase., Greber BJ, Perez-Bertoldi JM, Lim K, Iavarone AT, Toso DB, Nogales E, Proc Natl Acad Sci U S A. 2020 Aug 27. pii: 2009627117. doi:, 10.1073/pnas.2009627117. PMID:32855301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (6xbz.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 6XBZ
  • CSU: Contacts of Structural Units for 6XBZ
  • Retrieve 6XBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XBZ from S2C, [Save to disk]
  • View 6XBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XBZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6xbz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xbz_J] [6xbz_I] [6xbz_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XBZ
  • Community annotation for 6XBZ at PDBWiki (http://pdbwiki.org)

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