6XY4 Apoptosis date Jan 29, 2020
title Structural Insight Into Sheep-Pox Virus Mediated Inhibition Apoptosis
authors C.D.Suraweera, M.G.Hinds, M.Kvansakul
compound source
Molecule: Anti-Apoptotic Membrane Protein
Chain: A
Engineered: Yes
Organism_scientific: Sheeppox Virus (Strain Turkeytu-V0212
Organism_taxid: 654928
Gene: Sppv_14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41

Molecule: Activator Of Apoptosis Harakiri
Chain: B
Synonym: Bh3-Interacting Domain-Containing Protein 3,Neuron Protein Dp5;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.220 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.280 70.660 115.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (6xy4.pdb1.gz) 78 Kb
  • CSU: Contacts of Structural Units for 6XY4
  • Structure Factors (241 Kb)
  • Retrieve 6XY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XY4 from S2C, [Save to disk]
  • View 6XY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XY4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6xy4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xy4_A] [6xy4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XY4
  • Community annotation for 6XY4 at PDBWiki (http://pdbwiki.org)

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