6YBT Translation date Mar 17, 2020
title Structure Of A Human 48s Translational Initiation Complex -
authors J.Brito Querido, M.Sokabe, S.Kraatz, Y.Gordiyenko, M.Skehel, C.Fr V.Ramakrishnan
compound source
Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: u
Synonym: Eif3a,Eukaryotic Translation Initiation Factor 3 S Eif-3-Theta,Eif3 P167,Eif3 P180,Eif3 P185;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: 2
Synonym: Eif3i,Eukaryotic Translation Initiation Factor 3 S Tgf-Beta Receptor-Interacting Protein 1,Trip-1,Eif-3-Beta,E

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: 1
Synonym: Eif3b,Eukaryotic Translation Initiation Factor 3 S Prt1 Homolog,Hprt1,Eif-3-Eta,Eif3 P110,Eif3 P116

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.00 Å
Gene
Ontology
ChainFunctionProcessComponent
1

  • eukaryotic translation initi...
  • 2

  • eukaryotic translation initi...
  • u

  • eukaryotic translation initi...
  • Primary referenceStructure of a human 48S translational initiation complex., Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V, Science. 2020 Sep 4;369(6508):1220-1227. doi: 10.1126/science.aba4904. PMID:32883864
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (6ybt.pdb1.gz) 102 Kb
  • CSU: Contacts of Structural Units for 6YBT
  • Retrieve 6YBT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YBT from S2C, [Save to disk]
  • View 6YBT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YBT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ybt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ybt_2] [6ybt_1] [6ybt_u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YBT
  • Community annotation for 6YBT at PDBWiki (http://pdbwiki.org)

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