6VY8 Biosynthetic Protein date Feb 25, 2020
title Nmr Solution Structure Of A Triazole Bridged Trypsin Inhibit On The Framework Of Sfti-1
authors A.M.White, P.J.Harvey, T.Durek, D.J.Craik
compound source
Molecule: Trypsin Inhibitor Gly-Arg-Rvj-Thr-Lys-Ser-Ile-Pro 2ag-Phe-Pro-Asp;
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Helianthus Annuus
Organism_common: Common Sunflower
Organism_taxid: 4232
methodSolution NMR
ligand 2AG, RVJ enzyme
Primary referenceApplication and Structural Analysis of Triazole-Bridged Disulfide Mimetics in Cyclic Peptides., White A, de Veer S, Wu G, Harvey P, Yap K, King GJ, Swedberg JE, Wang CK, Law RHP, Durek T, Craik D, Angew Chem Int Ed Engl. 2020 Apr 8. doi: 10.1002/anie.202003435. PMID:32270580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (6vy8.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 6VY8
  • CSU: Contacts of Structural Units for 6VY8
  • Original NMR restraints for 6VY8 from PDB
  • Retrieve 6VY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VY8 from S2C, [Save to disk]
  • View 6VY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VY8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vy8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vy8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VY8
  • Community annotation for 6VY8 at PDBWiki (http://pdbwiki.org)

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