7BRU Membrane Protein date Mar 30, 2020
title Crystal Structure Of Human Rtn3 Lir Fused To Human Gabarap
authors A.Yamasaki, N.N.Noda
compound source
Molecule: Reticulon-3,Gamma-Aminobutyric Acid Receptor-Asso Protein;
Chain: A, B, C
Synonym: Homolog Of Asy Protein,Hap,Neuroendocrine-Specific Like 2,Nsp-Like Protein 2,Neuroendocrine-Specific Protein-L Nsplii,Gaba(A) Receptor-Associated Protein,Mm46;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rtn3, Gabarap
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 41 21 2
R_factor 0.206 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.418 137.418 67.444 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • chemical synaptic transmissi...

  • Primary referenceSuper-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes., Mochida K, Yamasaki A, Matoba K, Kirisako H, Noda NN, Nakatogawa H, Nat Commun. 2020 Jul 3;11(1):3306. doi: 10.1038/s41467-020-17163-y. PMID:32620754
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (7bru.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 7BRU
  • CSU: Contacts of Structural Units for 7BRU
  • Structure Factors (1066 Kb)
  • Retrieve 7BRU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7BRU from S2C, [Save to disk]
  • View 7BRU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7BRU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7bru from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7bru_B] [7bru_A] [7bru_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7BRU
  • Community annotation for 7BRU at PDBWiki (http://pdbwiki.org)

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