7BZT Virus date Apr 28, 2020
title Cryo-Em Structure Of Mature Coxsackievirus A10 In Complex Wi Ph 7.4
authors Y.Cui, R.Peng, H.Song, Z.Tong, G.F.Gao, J.Qi
compound source
Molecule: Capsid Protein Vp1
Chain: A
Organism_scientific: Coxsackievirus A10
Organism_taxid: 42769

Molecule: Capsid Protein Vp2
Chain: B

Organism_scientific: Coxsackievirus A10
Organism_taxid: 42769

Molecule: Capsid Protein Vp3
Chain: C

Organism_scientific: Coxsackievirus A10
Organism_taxid: 42769

Molecule: Capsid Protein Vp4
Chain: D

Organism_scientific: Coxsackievirus A10
Organism_taxid: 42769

Molecule: Krm1
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand NAG, SPH enzyme
Primary referenceMolecular basis of Coxsackievirus A10 entry using the two-in-one attachment and uncoating receptor KRM1., Cui Y, Peng R, Song H, Tong Z, Qu X, Liu S, Zhao X, Chai Y, Wang P, Gao GF, Qi J, Proc Natl Acad Sci U S A. 2020 Aug 4;117(31):18711-18718. doi:, 10.1073/pnas.2005341117. Epub 2020 Jul 20. PMID:32690697
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (7bzt.pdb1.gz) 9178 Kb
  • LPC: Ligand-Protein Contacts for 7BZT
  • CSU: Contacts of Structural Units for 7BZT
  • Retrieve 7BZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7BZT from S2C, [Save to disk]
  • View 7BZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7BZT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7bzt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7bzt_C] [7bzt_B] [7bzt_E] [7bzt_D] [7bzt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7BZT
  • Community annotation for 7BZT at PDBWiki (http://pdbwiki.org)

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