7RDB Cell Adhesion date Jul 09, 2021
title Crystal Structure Of Tspan15 Large Extracellular Loop (Tspan
authors C.H.Lipper, K.H.Gabriel, T.C.M.Seegar, K.L.Durr, M.G.Tomlinson, S.C.Blacklow
compound source
Molecule: Tetraspanin-15
Chain: B, A, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Synonym: Tspan-15,Tetraspan Net-7,Transmembrane 4 Superfami 15;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tspan15, Net7, Tm4sf15, Unq677pro1311
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f
symmetry Space Group: P 1
R_factor 0.235 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.570 91.950 112.380 87.55 86.52 86.24
method X-Ray Diffractionresolution 2.52 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (977 Kb) [Save to disk]
  • Biological Unit Coordinates (7rdb.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (7rdb.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (7rdb.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (7rdb.pdb4.gz) 44 Kb
  • Biological Unit Coordinates (7rdb.pdb5.gz) 44 Kb
  • Biological Unit Coordinates (7rdb.pdb6.gz) 45 Kb
  • Biological Unit Coordinates (7rdb.pdb7.gz) 45 Kb
  • Biological Unit Coordinates (7rdb.pdb8.gz) 44 Kb
  • Biological Unit Coordinates (7rdb.pdb9.gz) 45 Kb
  • CSU: Contacts of Structural Units for 7RDB
  • Structure Factors (2294 Kb)
  • Retrieve 7RDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7RDB from S2C, [Save to disk]
    • View 7RDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7RDB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7rdb_L] [7rdb_J] [7rdb_M] [7rdb_D] [7rdb_S] [7rdb_G] [7rdb_T] [7rdb_B] [7rdb_Q] [7rdb_A] [7rdb_U] [7rdb_W] [7rdb_H] [7rdb_O] [7rdb_E] [7rdb_N] [7rdb_P] [7rdb_R] [7rdb_K] [7rdb_I] [7rdb_C] [7rdb_V] [7rdb_X] [7rdb_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7RDB
  • Community annotation for 7RDB at PDBWiki (http://pdbwiki.org)

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