1A33 Isomerase date Jan 27, 1998
title Peptidylprolyl Isomerase, Cyclophilin-Like Domain From Brugi
authors V.Mikol, D.Ma, C.K.S.Carlow
compound source
Molecule: Peptidylprolyl Isomerase
Chain: A
Fragment: Cyclophilin-Like Domain
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Brugia Malayi
Organism_taxid: 6279
Atcc: Atcc 75593
Collection: Atcc 75593
Gene: Bmcyp-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Er2267
Expression_system_vector_type: Double Strand Vector (Tac, P Ampr);
Expression_system_plasmid: Pmal-C2
Expression_system_gene: Mbp Fusion Protein
symmetry Space Group: P 41 21 2
R_factor 0.169 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.900 57.900 140.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1A58, 1C5F
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the cyclophilin-like domain from the parasitic nematode Brugia malayi., Mikol V, Ma D, Carlow CK, Protein Sci 1998 Jun;7(6):1310-6. PMID:9655334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1a33.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1A33
  • Likely Quarternary Molecular Structure file(s) for 1A33
  • Structure Factors (100 Kb)
  • Retrieve 1A33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A33 from S2C, [Save to disk]
  • Re-refined 1a33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A33
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A33, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a33__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a33_A] [1a33]
  • SWISS-PROT database: [Q27450]
  • Domain organization of [CYP1_BRUMA] by SWISSPFAM
  • Other resources with information on 1A33
  • Community annotation for 1A33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science