1C5F Isomerase Immunosuppressant date Nov 22, 1999
title Crystal Structure Of The Cyclophilin-Like Domain From Brugia Complexed With Cyclosporin A
authors P.J.Ellis, C.K.S.Carlow, D.Ma, P.Kuhn
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase 1
Chain: A, C, E, G, I, K, M, O
Fragment: Cyclophilin-Like Domain, Residues 1-177
Synonym: Ppiase 1, Rotamase, Cyclophilin
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Brugia Malayi
Organism_taxid: 6279
Atcc: 75593
Gene: Bmcyp-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Er2267
Expression_system_vector_type: Double Strand Vector (Tac, P Ampr);
Expression_system_vector: Plasmid
Expression_system_plasmid: Pmal-C2
Expression_system_gene: Mbp Fusion Protein

Molecule: Cyclosporin A
Chain: B, D, F, H, J, L, N, P
Synonym: Cyclosporine, Ciclosporin, Ciclosporine
Engineered: Yes

Synthetic: Yes
Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.000 100.160 133.920 90.00 93.75 90.00
method X-Ray Diffractionresolution 2.47 Å
ligand ABA, BMT, DAL, MLE, MVA, SAR enzyme Isomerase E.C.5.2.1.8 BRENDA
note 1C5F supersedes 1QTL
related structures by homologous chain: 1A33
Gene
Ontology
ChainFunctionProcessComponent
A, O, M, C, K, I, G, E


Primary referenceCrystal structure of the complex of brugia malayi cyclophilin and cyclosporin A., Ellis PJ, Carlow CK, Ma D, Kuhn P, Biochemistry 2000 Jan 25;39(3):592-8. PMID:10642184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (1c5f.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1c5f.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (1c5f.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (1c5f.pdb4.gz) 32 Kb
  • Biological Unit Coordinates (1c5f.pdb5.gz) 32 Kb
  • Biological Unit Coordinates (1c5f.pdb6.gz) 33 Kb
  • Biological Unit Coordinates (1c5f.pdb7.gz) 33 Kb
  • Biological Unit Coordinates (1c5f.pdb8.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1C5F
  • CSU: Contacts of Structural Units for 1C5F
  • Likely Quarternary Molecular Structure file(s) for 1C5F
  • Structure Factors (511 Kb)
  • Retrieve 1C5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C5F from S2C, [Save to disk]
  • Re-refined 1c5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C5F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C5F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c5fa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1c5fc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1c5fe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1c5fg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1c5fi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1c5fk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1c5fm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1c5fo_, region O [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c5f_G] [1c5f_I] [1c5f_H] [1c5f_M] [1c5f_P] [1c5f_B] [1c5f_J] [1c5f_E] [1c5f] [1c5f_L] [1c5f_F] [1c5f_D] [1c5f_O] [1c5f_A] [1c5f_K] [1c5f_N] [1c5f_C]
  • SWISS-PROT database: [Q27450]
  • Domain organization of [CYP1_BRUMA] by SWISSPFAM
  • Other resources with information on 1C5F
  • Community annotation for 1C5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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