1AMP Hydrolase(Aminopeptidase) date Apr 22, 1994
title Crystal Structure Of Aeromonas Proteolytica Aminopeptidase: A Prototypical Member Of The Co-Catalytic Zinc Enzyme Family
authors B.Chevrier, C.Schalk, H.D'Orchymont, J.M.Rondeau, D.Moras, C.Tarnus
compound source
Molecule: Aminopeptidase
Chain: A
Ec: 3.4.11.10
Engineered: Yes
 Organism_scientific: Vibrio Proteolyticus
Organism_taxid: 671
symmetry Space Group: P 61 2 2
R_factor 0.161 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.000 111.000 92.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme Hydrolase E.C.3.4.11.10 BRENDA
related structures by homologous chain: 1CP6, 1LOK
Primary referenceCrystal structure of Aeromonas proteolytica aminopeptidase: a prototypical member of the co-catalytic zinc enzyme family., Chevrier B, Schalk C, D'Orchymont H, Rondeau JM, Moras D, Tarnus C, Structure 1994 Apr 15;2(4):283-91. PMID:8087555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1amp.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1AMP
  • CSU: Contacts of Structural Units for 1AMP
  • Likely Quarternary Molecular Structure file(s) for 1AMP
  • Structure Factors (276 Kb)
  • Retrieve 1AMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AMP from S2C, [Save to disk]
  • Re-refined 1amp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1AMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AMP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AMP, from MSDmotif at EBI
  • Genome occurence of 1AMP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1amp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1amp_A] [1amp]
  • SWISS-PROT database: [Q01693]
  • Domain organization of [AMPX_VIBPR] by SWISSPFAM
    • Other resources with information on 1AMP
  • Community annotation for 1AMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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