1B0R CRYSTAL STRUCTURE OF HLA-A*0201 COMPLEXED WITH A PEPTIDE WITH THE CARBOXYL-TERMINAL GROUP SUBSTITUTED BY A METHYL GROUP date
authors Bouvier, M., Guo, H., Smith, K.J., Wiley, D.C.
compound source
symmetry
R_factor
R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand CDE enzyme
related structures by homologous chain: 1CE6, 1P4L, 1PY4
Gene
Ontology
ChainFunctionProcessComponent
B
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    • Primary referenceCrystal structures of HLA-A*0201 complexed with antigenic peptides with either the amino- or carboxyl-terminal group substituted by a methyl group., Bouvier M, Guo HC, Smith KJ, Wiley DC, Proteins 1998 Oct 1;33(1):97-106. PMID:9741848
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1b0r.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1B0R
  • CSU: Contacts of Structural Units for 1B0R
  • Likely Quarternary Molecular Structure file(s) for 1B0R
  • Retrieve 1B0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B0R from S2C, [Save to disk]
    • View 1B0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1B0R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B0R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b0ra2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1b0ra1, region A:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1b0rb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b0r_A] [1b0r_B] [1b0r_C] [1b0r]
  • SWISS-PROT database: [P01892] [P61769]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 1B0R: [IGc1 ] by SMART
    • Other resources with information on 1B0R
  • Community annotation for 1B0R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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