1BET Growth Factor date Apr 08, 1993
title New Protein Fold Revealed By A 2.3 Angstrom Resolution Cryst Structure Of Nerve Growth Factor
authors N.Q.Mcdonald, R.Lapatto, J.Murray-Rust, J.Gunning, A.Wlodawer, T.L.Blundell
compound source
Molecule: Beta-Nerve Growth Factor
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 65 2 2
R_factor 0.220 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.480 56.480 182.390 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
note 1BET (Molecule of the Month:pdb68)
related structures by homologous chain: 1SG1, 1WWW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew protein fold revealed by a 2.3-A resolution crystal structure of nerve growth factor., McDonald NQ, Lapatto R, Murray-Rust J, Gunning J, Wlodawer A, Blundell TL, Nature 1991 Dec 5;354(6352):411-4. PMID:1956407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1bet.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1BET
  • Likely Quarternary Molecular Structure file(s) for 1BET
  • Retrieve 1BET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BET from S2C, [Save to disk]
    • View 1BET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BET
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BET, from MSDmotif at EBI
  • Genome occurence of 1BET's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bet__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bet] [1bet_A]
  • SWISS-PROT database: [P01139]
  • Domain organization of [NGF_MOUSE] by SWISSPFAM
  • Domain found in 1BET: [NGF ] by SMART
    • Other resources with information on 1BET
  • Community annotation for 1BET at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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