1WWW Nerve Growth Factor Trka Complex date Mar 12, 1999
title Ngf In Complex With Domain 5 Of The Trka Receptor
authors C.Wiesmann, M.H.Ultsch, A.M.De Vos
compound source
Molecule: Protein (Nerve Growth Factor)
Chain: V, W
Synonym: Beta-Ngf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (Trka Receptor)
Chain: X, Y
Fragment: Domain 5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.245 53.735 77.101 90.00 107.34 90.00
method X-Ray Diffractionresolution 2.20 Å
note 1WWW (Molecule of the Month:pdb68)
related structures by homologous chain: 1BET, 1HE7, 1WWA
Gene
Ontology
ChainFunctionProcessComponent
W, V


Primary referenceCrystal structure of nerve growth factor in complex with the ligand-binding domain of the TrkA receptor., Wiesmann C, Ultsch MH, Bass SH, de Vos AM, Nature 1999 Sep 9;401(6749):184-8. PMID:10490030
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1www.pdb1.gz) 73 Kb
  • CSU: Contacts of Structural Units for 1WWW
  • Likely Quarternary Molecular Structure file(s) for 1WWW
  • Retrieve 1WWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WWW from S2C, [Save to disk]
  • View 1WWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WWW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WWW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wwwv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1wwww_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1wwwx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1wwwy_, region Y [Jmol] [rasmolscript] [script source]
  • Fold representative 1www from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1www] [1www_X] [1www_W] [1www_V] [1www_Y]
  • SWISS-PROT database: [P01138] [P04629]
  • Domain organization of [NGF_HUMAN] [NTRK1_HUMAN] by SWISSPFAM
  • Domain found in 1WWW: [NGF ] by SMART
  • Other resources with information on 1WWW
  • Community annotation for 1WWW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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