1WWA Transferase date Apr 29, 1999
title Ngf Binding Domain Of Human Trka Receptor
authors C.Wiesmann, M.H.Ultsch, S.H.Bass, A.M.De Vos
compound source
Molecule: Protein (Nerve Growth Factor Receptor Trka)
Chain: X, Y
Fragment: Ligand Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.207 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.420 106.420 75.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1WWW
Primary referenceCrystal structures of the neurotrophin-binding domain of TrkA, TrkB and TrkC., Ultsch MH, Wiesmann C, Simmons LC, Henrich J, Yang M, Reilly D, Bass SH, de Vos AM, J Mol Biol 1999 Jul 2;290(1):149-59. PMID:10388563
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1wwa.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (1wwa.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (1wwa.pdb3.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1WWA
  • Likely Quarternary Molecular Structure file(s) for 1WWA
  • Retrieve 1WWA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WWA from S2C, [Save to disk]
  • View 1WWA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WWA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WWA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wwax_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1wway_, region Y [Jmol] [rasmolscript] [script source]
  • Fold representative 1wwa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wwa] [1wwa_Y] [1wwa_X]
  • SWISS-PROT database: [P04629]
  • Domain organization of [NTRK1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1WWA with the sequences similar proteins can be viewed for 1WWA's classification [NTRK1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NTRK1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1WWA
  • Community annotation for 1WWA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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