1HE7 Transferase date Nov 20, 2000
title Human Nerve Growth Factor Receptor Trka
authors M.J.Banfield, A.G.S.Robertson, S.J.Allen, J.A.Dando, S.J.Tyler, G.S.Bennett, S.D.Brain, G.G.F.Mason, P.H.Holden, A.R.Clarke, R.L.Naylor, G.K.Wilcock, R.L.Brady
compound source
Molecule: High Affinity Nerve Growth Factor Receptor
Chain: A
Fragment: Ligand Binding Domain, Spans Residues 285-380
Synonym: Trk1 Transforming Tyrosine Kinase Protein, P140-Trka, Trk-A;
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plamid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43 2 2
R_factor 0.237 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.854 50.854 107.808 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.0 Å
ligand GOL enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1WWW
Primary referenceIdentification and structure of the nerve growth factor binding site on TrkA., Robertson AG, Banfield MJ, Allen SJ, Dando JA, Mason GG, Tyler SJ, Bennett GS, Brain SD, Clarke AR, Naylor RL, Wilcock GK, Brady RL, Dawbarn D, Biochem Biophys Res Commun 2001 Mar 23;282(1):131-41. PMID:11263982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1he7.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1HE7
  • CSU: Contacts of Structural Units for 1HE7
  • Likely Quarternary Molecular Structure file(s) for 1HE7
  • Structure Factors (85 Kb)
  • Retrieve 1HE7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HE7 from S2C, [Save to disk]
  • Re-refined 1he7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HE7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HE7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HE7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1he7a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1he7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1he7_A] [1he7]
  • SWISS-PROT database: [P04629]
  • Domain organization of [NTRK1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1HE7 with the sequences similar proteins can be viewed for 1HE7's classification [NTRK1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NTRK1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1HE7
  • Community annotation for 1HE7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science