1BG7 Iron Storage date Jun 05, 1998
title Localized Unfolding At The Junction Of Three Ferritin Subuni Mechanism For Iron Release?
authors H.Takagi, D.Shi, Y.Ha, N.M.Allewell, E.C.Theil
compound source
Molecule: Ferritin
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Rana Catesbeiana
Organism_common: Bullfrog
Organism_taxid: 8400
Strain: Bl21-De3
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pet-9a
Expression_system_plasmid: Bl21
symmetry Space Group: F 4 3 2
R_factor 0.207 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.800 182.800 182.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CA enzyme
related structures by homologous chain: 1XZ1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLocalized unfolding at the junction of three ferritin subunits. A mechanism for iron release?, Takagi H, Shi D, Ha Y, Allewell NM, Theil EC, J Biol Chem 1998 Jul 24;273(30):18685-8. PMID:9668036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1bg7.pdb1.gz) 595 Kb
  • LPC: Ligand-Protein Contacts for 1BG7
  • CSU: Contacts of Structural Units for 1BG7
  • Likely Quarternary Molecular Structure file(s) for 1BG7
  • Structure Factors (356 Kb)
  • Retrieve 1BG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BG7 from S2C, [Save to disk]
  • Re-refined 1bg7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BG7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BG7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bg7__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bg7] [1bg7_A]
  • SWISS-PROT database: [P07229]
  • Domain organization of [FRI1_RANCA] by SWISSPFAM
  • Other resources with information on 1BG7
  • Community annotation for 1BG7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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