1BPE Nucleotidyltransferase date Apr 12, 1994
title Crystal Structure Of Rat Dna Polymerase Beta; Evidence For A Common Polymerase Mechanism
authors M.R.Sawaya, H.Pelletier, A.Kumar, S.H.Wilson, J.Kraut
compound source
Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.319 68.208 75.038 90.00 91.77 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand DTP enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism., Sawaya MR, Pelletier H, Kumar A, Wilson SH, Kraut J, Science 1994 Jun 24;264(5167):1930-5. PMID:7516581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1bpe.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1BPE
  • CSU: Contacts of Structural Units for 1BPE
  • Likely Quarternary Molecular Structure file(s) for 1BPE
  • Retrieve 1BPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BPE from S2C, [Save to disk]
  • View 1BPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BPE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BPE, from MSDmotif at EBI
  • Genome occurence of 1BPE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bpe_1, region 12-91 [Jmol] [rasmolscript] [script source]
        - Domain d1bpe_4, region 149-335 [Jmol] [rasmolscript] [script source]
        - Domain d1bpe_3, region 92-148 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bpe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bpe] [1bpe_A]
  • SWISS-PROT database: [P06766]
  • Domain organization of [DPOLB_RAT] by SWISSPFAM
  • Domains found in 1BPE: [HhH1] [POLXc ] by SMART
  • Other resources with information on 1BPE
  • Community annotation for 1BPE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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