1BPM Hydrolase(Alpha-Aminoacylpeptide) date Mar 02, 1993
title Differentiation And Identification Of The Two Catalytic Meta Sites In Bovine Lens Leucine Aminopeptidase By X-Ray Crysta
authors H.Kim, W.N.Lipscomb
compound source
Molecule: Leucine Aminopeptidase
Chain: A
Ec: 3.4.11.1
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Lens
symmetry Space Group: P 63 2 2
R_factor 0.189 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.100 129.100 120.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand MG, ZN enzyme Hydrolase E.C.3.4.11.1 BRENDA
related structures by homologous chain: 1BPN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferentiation and identification of the two catalytic metal binding sites in bovine lens leucine aminopeptidase by x-ray crystallography., Kim H, Lipscomb WN, Proc Natl Acad Sci U S A 1993 Jun 1;90(11):5006-10. PMID:8506345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1bpm.pdb1.gz) 424 Kb
  • LPC: Ligand-Protein Contacts for 1BPM
  • CSU: Contacts of Structural Units for 1BPM
  • Likely Quarternary Molecular Structure file(s) for 1BPM
  • Retrieve 1BPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BPM from S2C, [Save to disk]
    • View 1BPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BPM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BPM, from MSDmotif at EBI
  • Genome occurence of 1BPM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bpm_1, region 1-159 [Jmol] [rasmolscript] [script source]
        - Domain d1bpm_2, region 160-484 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bpm] [1bpm_A]
  • SWISS-PROT database: [P00727]
  • Domain organization of [AMPL_BOVIN] by SWISSPFAM
    • Other resources with information on 1BPM
  • Community annotation for 1BPM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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