1C0M Transferase date Jul 16, 1999
title Crystal Structure Of Rsv Two-Domain Integrase
authors Z.N.Yang, T.C.Mueser, F.D.Bushman, C.C.Hyde
compound source
Molecule: Protein (Integrase)
Chain: A, B, C, D
Fragment: Residues 49-286
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rous Sarcoma Virus
Organism_taxid: 11886
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.216 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.752 66.369 76.670 67.47 78.61 90.18
method X-Ray Diffractionresolution 2.53 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1VSI
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of an active two-domain derivative of Rous sarcoma virus integrase., Yang ZN, Mueser TC, Bushman FD, Hyde CC, J Mol Biol 2000 Feb 18;296(2):535-48. PMID:10669607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1c0m.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1c0m.pdb2.gz) 72 Kb
  • CSU: Contacts of Structural Units for 1C0M
  • Likely Quarternary Molecular Structure file(s) for 1C0M
  • Structure Factors (242 Kb)
  • Retrieve 1C0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C0M from S2C, [Save to disk]
  • Re-refined 1c0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1C0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C0M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C0M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c0ma1, region A:217-269 [Jmol] [rasmolscript] [script source]
        - Domain d1c0ma2, region A:49-216 [Jmol] [rasmolscript] [script source]
        - Domain d1c0mb1, region B:217-269 [Jmol] [rasmolscript] [script source]
        - Domain d1c0mb2, region B:54-216 [Jmol] [rasmolscript] [script source]
        - Domain d1c0mc1, region C:217-270 [Jmol] [rasmolscript] [script source]
        - Domain d1c0mc2, region C:49-216 [Jmol] [rasmolscript] [script source]
        - Domain d1c0md1, region D:217-269 [Jmol] [rasmolscript] [script source]
        - Domain d1c0md2, region D:54-216 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c0m_D] [1c0m_C] [1c0m] [1c0m_B] [1c0m_A]
  • SWISS-PROT database: [P03354]
  • Domain organization of [POL_RSVP] by SWISSPFAM
    • Other resources with information on 1C0M
  • Community annotation for 1C0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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