1C8F Virus date May 05, 2000
title Feline Panleukopenia Virus Empty Capsid Structure
authors M.G.Rossmann, A.A.Simpson
compound source
Molecule: Feline Panleukopenia Virus Capsid
Chain: A
Organism_scientific: Feline Panleukopenia Virus
Organism_taxid: 10786
symmetry Space Group: P 21 21 21
R_factor 0.285 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
380.120 379.250 350.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CA enzyme
related structures by homologous chain: 1C8E, 1C8G
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHost range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses., Simpson AA, Chandrasekar V, Hebert B, Sullivan GM, Rossmann MG, Parrish CR, J Mol Biol 2000 Jul 14;300(3):597-610. PMID:10884355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1c8f.pdb1.gz) 5190 Kb
  • LPC: Ligand-Protein Contacts for 1C8F
  • CSU: Contacts of Structural Units for 1C8F
  • Likely Quarternary Molecular Structure file(s) for 1C8F
  • Structure Factors (5176 Kb)
  • Retrieve 1C8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C8F from S2C, [Save to disk]
  • View 1C8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C8F
  • VIPERdb: visual, structural and computational analysis of 1C8F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C8F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c8fa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1c8f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c8f] [1c8f_A]
  • SWISS-PROT database: [P24840]
  • Domain organization of [COAT_FPV19] by SWISSPFAM
  • Other resources with information on 1C8F
  • Community annotation for 1C8F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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