| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (65 Kb) [Save to disk]
 - Biological Unit Coordinates (1d5w.pdb1.gz) 41 Kb
- Biological Unit Coordinates (1d5w.pdb2.gz) 40 Kb
- LPC: Ligand-Protein Contacts for 1D5W
- CSU: Contacts of Structural Units for 1D5W
- Likely Quarternary Molecular Structure file(s) for 1D5W
- Structure Factors (182 Kb)
- Retrieve 1D5W in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 1D5W
from S2C,
[Save to disk]
- Re-refined 1d5w structure
from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
|
| View 1D5W in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
|
| Visual 3D analysis of 1D5W |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
|
| Structure-derived information |
- Electron Density
related parameters from EDS Electron Density Server, at Upsala
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 1D5W,
from MSDmotif at EBI
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1d5wa_, region A
[Jmol]
[rasmolscript]
[script source]
- Domain d1d5wb_, region B
[Jmol]
[rasmolscript]
[script source]
- Domain d1d5wc_, region C
[Jmol]
[rasmolscript]
[script source]
- Fold representative 1d5w from FSSP and Dali (Families of Structurally Similar Proteins)
- Class (fold), Architecture (subfold), Topology, Homologous superfamily from
CATH
- Summaries and structural analyses of PDB data files from
PDBSum
- Identification of Protein Pockets & Cavities at
CASTp
|
| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1d5w] [1d5w_A] [1d5w_B] [1d5w_C]
- SWISS-PROT database: [P10958]
- Domain organization of [FIXJ_RHIME] by SWISSPFAM
- Domain found in 1D5W: [REC
] by SMART
|
|
Other resources with information on 1D5W |
- Community annotation for 1D5W at PDBWiki (http://pdbwiki.org)
- MMDB (Entrez's Structure Database)
|
| Movements, Movies and Images |
- Domain movements in
1D5W from the Database of
Macromolecular Movements.
- Images
from IMB Jena Image Library
of Biological Macromolecules.
|
|
