1D6Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, CU, GOL, HY1, NO, PEA, TYQ enzyme
related structures by homologous chain: 1D6U, 1QAL
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceVisualization of dioxygen bound to copper during enzyme catalysis., Wilmot CM, Hajdu J, McPherson MJ, Knowles PF, Phillips SE, Science 1999 Nov 26;286(5445):1724-8. PMID:10576737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (1d6y.pdb1.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 1D6Y
  • CSU: Contacts of Structural Units for 1D6Y
  • Likely Quarternary Molecular Structure file(s) for 1D6Y
  • Structure Factors (501 Kb)
  • Retrieve 1D6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D6Y from S2C, [Save to disk]
  • Re-refined 1d6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D6Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D6Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d6ya3, region A:186-300 [Jmol] [rasmolscript] [script source]
        - Domain d1d6ya1, region A:301-724 [Jmol] [rasmolscript] [script source]
        - Domain d1d6ya4, region A:7-90 [Jmol] [rasmolscript] [script source]
        - Domain d1d6ya2, region A:91-185 [Jmol] [rasmolscript] [script source]
        - Domain d1d6yb3, region B:186-300 [Jmol] [rasmolscript] [script source]
        - Domain d1d6yb1, region B:301-725 [Jmol] [rasmolscript] [script source]
        - Domain d1d6yb4, region B:6-90 [Jmol] [rasmolscript] [script source]
        - Domain d1d6yb2, region B:91-185 [Jmol] [rasmolscript] [script source]
  • Fold representative 1d6y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d6y] [1d6y_A] [1d6y_B]
  • SWISS-PROT database: [P46883]
  • Domain organization of [AMO_ECOLI] by SWISSPFAM
    • Other resources with information on 1D6Y
  • Community annotation for 1D6Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science