1DIC Serine Protease date Jul 08, 1998
title Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
authors L.B.Cole, J.M.Kilpatrick, N.Chu, Y.S.Babu
compound source
Molecule: Factor D
Chain: A
Other_details: 3,4-Dichloroisocoumarin Group Linked To Serine 195
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Isolated From A Patient With Fanconi Syndrome
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.251
length a length b length c angle alpha angle beta angle gamma
56.300 51.570 39.840 90.00 106.05 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand DIC, O enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1BIO, 1DSU

Primary referenceStructure of 3,4-dichloroisocoumarin-inhibited factor D., Cole LB, Kilpatrick JM, Chu N, Babu YS, Acta Crystallogr D Biol Crystallogr 1998 Sep 1;54 ( Pt 5):711-7. PMID:9757085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1dic.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1DIC
  • CSU: Contacts of Structural Units for 1DIC
  • Likely Quarternary Molecular Structure file(s) for 1DIC
  • Retrieve 1DIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DIC from S2C, [Save to disk]
  • View 1DIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DIC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DIC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dica_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dic from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dic_A] [1dic]
  • SWISS-PROT database: [P00746]
  • Domain organization of [CFAD_HUMAN] by SWISSPFAM
  • Domain found in 1DIC: [Tryp_SPc ] by SMART
  • Other resources with information on 1DIC
  • Community annotation for 1DIC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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