1DM2	Cell Cycle	date	Dec 13, 1999
title	Human Cyclin-Dependent Kinase 2 Complexed With The Inhibitor Hymenialdisine
authors	A.M.Thunnissen, S.H.Kim
compound		source
Molecule: Cyclin-Dependent Kinase 2 Chain: A Synonym: Cell Division Protein Kinase 2, P33 Protein Kinase Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Sf9 Cells Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Virus Expression_system_vector: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.390 70.670 72.260 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	EDO, HMD	enzyme	Transferase E.C.2.7.1 BRENDA
related structures	by homologous chain: 1B39, 1CKP
Gene Ontology	Chain Function Process Component A
Primary reference	Inhibition of cyclin-dependent kinases, GSK-3beta and CK1 by hymenialdisine, a marine sponge constituent., Meijer L, Thunnissen AM, White AW, Garnier M, Nikolic M, Tsai LH, Walter J, Cleverley KE, Salinas PC, Wu YZ, Biernat J, Mandelkow EM, Kim SH, Pettit GR, Chem Biol 2000 Jan;7(1):51-63. PMID:10662688

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1dm2.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1DM2 CSU: Contacts of Structural Units for 1DM2 Likely Quarternary Molecular Structure file(s) for 1DM2 Retrieve 1DM2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DM2 from S2C, [Save to disk]

View 1DM2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DM2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DM2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dm2a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dm2] [1dm2_A] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 1DM2: [S_TKc ] by SMART

Other resources with information on 1DM2

Community annotation for 1DM2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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