1DO2 Chaperone date Dec 18, 1999
title Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Esch Coli
authors M.Bochtler, C.Hartmann, H.K.Song, G.P.Bourenkov, H.D.Bartunik
compound source
Molecule: Protein (Heat Shock Locus U)
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Xl-1 Blue
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet12b (T7 Promotor)
symmetry Space Group: P 3 2 1
R_factor 0.229 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
201.777 201.777 171.628 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.00 Å
ligand ANP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe structures of HsIU and the ATP-dependent protease HsIU-HsIV., Bochtler M, Hartmann C, Song HK, Bourenkov GP, Bartunik HD, Huber R, Nature 2000 Feb 17;403(6771):800-5. PMID:10693812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (1do2.pdb1.gz) 378 Kb
  • Biological Unit Coordinates (1do2.pdb2.gz) 129 Kb
  • Biological Unit Coordinates (1do2.pdb3.gz) 378 Kb
  • LPC: Ligand-Protein Contacts for 1DO2
  • CSU: Contacts of Structural Units for 1DO2
  • Likely Quarternary Molecular Structure file(s) for 1DO2
  • Retrieve 1DO2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DO2 from S2C, [Save to disk]
  • View 1DO2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DO2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DO2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1do2a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1do2b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1do2c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1do2d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1do2_C] [1do2_D] [1do2_B] [1do2_A] [1do2]
  • SWISS-PROT database: [P0A6H5]
  • Domain organization of [HSLU_ECOLI] by SWISSPFAM
  • Domains found in 1DO2: [AAA] [ClpB_D2-small ] by SMART
  • Other resources with information on 1DO2
  • Community annotation for 1DO2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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