1DPW	Hydrolase	date	Dec 28, 1999
title	Structure Of Hen Egg-White Lysozyme In Complex With Mpd
authors	M.S.Weiss, G.J.Palm, R.Hilgenfeld
compound		source
Molecule: Lysozyme Chain: A Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Tissue: Egg-White
symmetry	Space Group: P 43 21 2	R_factor 0.178 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.510 77.510 37.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.64 Å
ligand	CL, MRD, TRS	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1DPX, 1H6M
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallization, structure solution and refinement of hen egg-white lysozyme at pH 8.0 in the presence of MPD., Weiss MS, Palm GJ, Hilgenfeld R, Acta Crystallogr D Biol Crystallogr 2000 Aug;56 ( Pt 8):952-8. PMID:10944331

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (1dpw.pdb1.gz) 24 Kb LPC: Ligand-Protein Contacts for 1DPW CSU: Contacts of Structural Units for 1DPW Likely Quarternary Molecular Structure file(s) for 1DPW Structure Factors (116 Kb) Retrieve 1DPW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DPW from S2C, [Save to disk] Re-refined 1dpw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DPW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DPW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DPW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dpwa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dpw_A] [1dpw] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domain found in 1DPW: [LYZ1 ] by SMART

Other resources with information on 1DPW

Community annotation for 1DPW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1DPW from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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