1DPX	Hydrolase	date	Dec 28, 1999
title	Structure Of Hen Egg-White Lysozyme
authors	M.S.Weiss, G.J.Palm, R.Hilgenfeld
compound		source
Molecule: Lysozyme Chain: A Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Tissue: Egg-White
symmetry	Space Group: P 43 21 2	R_factor 0.187 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.050 77.050 37.210 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	CL	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1DPW, 1W6Z
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallization, structure solution and refinement of hen egg-white lysozyme at pH 8.0 in the presence of MPD., Weiss MS, Palm GJ, Hilgenfeld R, Acta Crystallogr D Biol Crystallogr 2000 Aug;56 ( Pt 8):952-8. PMID:10944331

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (1dpx.pdb1.gz) 24 Kb LPC: Ligand-Protein Contacts for 1DPX CSU: Contacts of Structural Units for 1DPX Likely Quarternary Molecular Structure file(s) for 1DPX Structure Factors (110 Kb) Retrieve 1DPX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DPX from S2C, [Save to disk] Re-refined 1dpx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DPX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DPX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DPX, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dpxa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dpx_A] [1dpx] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domain found in 1DPX: [LYZ1 ] by SMART

Other resources with information on 1DPX

Community annotation for 1DPX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1DPX from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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