1DPX Hydrolase date Dec 28, 1999
title Structure Of Hen Egg-White Lysozyme
authors M.S.Weiss, G.J.Palm, R.Hilgenfeld
compound source
Molecule: Lysozyme
Chain: A
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg-White
symmetry Space Group: P 43 21 2
R_factor 0.187 R_Free 0.246
length a length b length c angle alpha angle beta angle gamma
77.050 77.050 37.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CL enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1DPW, 1W6Z

Primary referenceCrystallization, structure solution and refinement of hen egg-white lysozyme at pH 8.0 in the presence of MPD., Weiss MS, Palm GJ, Hilgenfeld R, Acta Crystallogr D Biol Crystallogr 2000 Aug;56 ( Pt 8):952-8. PMID:10944331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1dpx.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1DPX
  • CSU: Contacts of Structural Units for 1DPX
  • Likely Quarternary Molecular Structure file(s) for 1DPX
  • Structure Factors (110 Kb)
  • Retrieve 1DPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DPX from S2C, [Save to disk]
  • Re-refined 1dpx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DPX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DPX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dpxa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dpx_A] [1dpx]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1DPX: [LYZ1 ] by SMART
  • Other resources with information on 1DPX
  • Community annotation for 1DPX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DPX from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science