1E4H Transport Protein date Jul 04, 2000
title Structure Of Human Transthyretin Complexed With Bromophenols Mode Of Binding
authors M.Ghosh, I.A.T.M.Meerts, A.Cook, A.Bergman, A.Brouwer, L.N.Johnso
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin, Attr, Tbpa
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Plasma
symmetry Space Group: P 21 21 2
R_factor 0.193 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.000 85.400 64.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, PBR enzyme
related structures by homologous chain: 1TT6, 1TYR
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceStructure of human transthyretin complexed with bromophenols: a new mode of binding., Ghosh M, Meerts IA, Cook A, Bergman A, Brouwer A, Johnson LN, Acta Crystallogr D Biol Crystallogr 2000 Sep;56 ( Pt 9):1085-95. PMID:10957627
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1e4h.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1E4H
  • CSU: Contacts of Structural Units for 1E4H
  • Likely Quarternary Molecular Structure file(s) for 1E4H
  • Retrieve 1E4H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4H from S2C, [Save to disk]
    • View 1E4H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E4H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e4hb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4h_A] [1e4h_B] [1e4h]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 1E4H: [TR_THY ] by SMART
    • Other resources with information on 1E4H
  • Community annotation for 1E4H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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