1E6F Receptor date Aug 15, 2000
title Human Mir-Receptor, Repeat 11
authors R.Von Buelow, K.R.Rajashankar, M.Dauter, Z.Dauter, S.Grimme, B.Sc K.Von Figura, I.Uson
compound source
Molecule: Cation-Independent Mannose-6-Phosphate Receptor
Chain: A, B
Fragment: Igf-II-Binding Domain, Repeat 11, Residues 1508-1
Synonym: Mannose-6-Phosphate Receptor, Insulin-Like Growth- Receptor, Ci Man-6-P Receptor, Ci-Mpr, 300 Kda Mannose 6-Ph Receptor, Mpr 300;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bhk-21
Organ: Kidney
Cell: Fibroblast
Cellular_location: Lysosome
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483
symmetry Space Group: P 21 21 21
length a length b length c angle alpha angle beta angle gamma
48.500 49.000 120.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
related structures by homologous chain: 1GP0, 1GQB
A, B

Primary referenceLocating the anomalous scatterer substructures in halide and sulfur phasing., Uson I, Schmidt B, von Bulow R, Grimme S, von Figura K, Dauter M, Rajashankar KR, Dauter Z, Sheldrick GM, Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):57-66. Epub 2002, Dec 19. PMID:12499540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1e6f.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (1e6f.pdb2.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1E6F
  • Likely Quarternary Molecular Structure file(s) for 1E6F
  • Structure Factors (472 Kb)
  • Retrieve 1E6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E6F from S2C, [Save to disk]
  • Re-refined 1e6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E6F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E6F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e6fa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e6fb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1e6f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e6f] [1e6f_B] [1e6f_A]
  • SWISS-PROT database: [P11717]
  • Belongs to the mannose 6-phosphate receptor (m6pr) family according to TCDB.
  • Domain organization of [MPRI_HUMAN] by SWISSPFAM
  • Other resources with information on 1E6F
  • Community annotation for 1E6F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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