1E79 Hydrolase date Aug 25, 2000
title Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcarbodiimide
authors C.Gibbons, M.G.Montgomery, A.G.W.Leslie, J.E.Walker
compound source
Molecule: Atp Synthase Alpha Chain Heart Isoform
Chain: A, B, C
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Atp Synthase Beta Chain
Chain: D, E, F
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Atp Synthase Gamma Chain
Chain: G
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Atp Synthase Delta Chain
Chain: H
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Atp Synthase Epsilon Chain
Chain: I
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
267.200 107.200 135.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ADP, ATP, DCW, GOL, MG, SO4 enzyme Hydrolase E.C.3.6.1.34 BRENDA
note 1E79 (Molecule of the Month:pdb72)
related structures by homologous chain: 1E1R, 1H8E, 1W0J
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


F, E, D


G


H


I


Primary referenceThe structure of the central stalk in bovine F(1)-ATPase at 2.4 A resolution., Gibbons C, Montgomery MG, Leslie AG, Walker JE, Nat Struct Biol. 2000 Nov;7(11):1055-61. PMID:11062563
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (527 Kb) [Save to disk]
  • Biological Unit Coordinates (1e79.pdb1.gz) 518 Kb
  • LPC: Ligand-Protein Contacts for 1E79
  • CSU: Contacts of Structural Units for 1E79
  • Likely Quarternary Molecular Structure file(s) for 1E79
  • Structure Factors (1145 Kb)
  • Retrieve 1E79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E79 from S2C, [Save to disk]
  • Re-refined 1e79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1E79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E79
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E79, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e79a2, region A:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1e79a1, region A:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1e79a3, region A:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1e79b2, region B:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1e79b1, region B:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1e79b3, region B:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1e79c2, region C:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1e79c1, region C:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1e79c3, region C:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1e79d1, region D:358-475 [Jmol] [rasmolscript] [script source]
        - Domain d1e79d3, region D:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1e79d2, region D:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1e79e1, region E:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1e79e3, region E:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1e79e2, region E:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1e79f1, region F:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1e79f3, region F:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1e79f2, region F:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1e79g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1e79h1, region H:101-145 [Jmol] [rasmolscript] [script source]
        - Domain d1e79h2, region H:15-100 [Jmol] [rasmolscript] [script source]
        - Domain d1e79i_, region I [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e79_H] [1e79_C] [1e79_E] [1e79_F] [1e79_D] [1e79_G] [1e79_B] [1e79] [1e79_A] [1e79_I]
  • SWISS-PROT database: [P05632] [P19483] [P00829] [P05630] [P05631]
  • Domain organization of [ATP5E_BOVIN] [ATPA_BOVIN] [ATPB_BOVIN] [ATPD_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 1E79: [AAA ] by SMART
    • Other resources with information on 1E79
  • Community annotation for 1E79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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