1EDO Oxidoreductase date Jan 28, 2000
title The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reduct Brassica Napus Complexed With Nadp+
authors M.Fisher, J.T.Kroon, W.Martindale, A.R.Stuitje, A.R.Slabas, J.B.R
compound source
Molecule: Beta-Keto Acyl Carrier Protein Reductase
Chain: A
Engineered: Yes
Organism_scientific: Brassica Napus
Organism_common: Rape
Organism_taxid: 3708
Gene: Oil Seed Rape
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Petjrs10.1
symmetry Space Group: P 64 2 2
R_factor 0.190 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.280 129.280 92.640 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe X-ray structure of Brassica napus beta-keto acyl carrier protein reductase and its implications for substrate binding and catalysis., Fisher M, Kroon JT, Martindale W, Stuitje AR, Slabas AR, Rafferty JB, Structure Fold Des 2000 Apr 15;8(4):339-47. PMID:10801480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1edo.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 1EDO
  • CSU: Contacts of Structural Units for 1EDO
  • Likely Quarternary Molecular Structure file(s) for 1EDO
  • Retrieve 1EDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EDO from S2C, [Save to disk]
  • View 1EDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EDO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EDO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1edoa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1edo] [1edo_A]
  • SWISS-PROT database: [Q93X62]
  • Domain organization of [FABG1_BRANA] by SWISSPFAM
  • Other resources with information on 1EDO
  • Community annotation for 1EDO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science