1F3H Apoptosis date Jun 03, 2000
title X-Ray Crystal Structure Of The Human Anti-Apoptotic Protein Survivin
authors M.A.Verdecia, H.Huang, E.Dutil, T.Hunter, J.P.Noel
compound source
Molecule: Survivin
Chain: A, B
Synonym: Apoptosis Inhibitor 4
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis8-3
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.287
length a length b length c angle alpha angle beta angle gamma
114.040 71.450 86.630 90.00 133.37 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand SO4, ZN enzyme
related structures by homologous chain: 1E31
A, B

Primary referenceStructure of the human anti-apoptotic protein survivin reveals a dimeric arrangement., Verdecia MA, Huang H, Dutil E, Kaiser DA, Hunter T, Noel JP, Nat Struct Biol 2000 Jul;7(7):602-8. PMID:10876248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1f3h.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1F3H
  • CSU: Contacts of Structural Units for 1F3H
  • Likely Quarternary Molecular Structure file(s) for 1F3H
  • Retrieve 1F3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F3H from S2C, [Save to disk]
  • View 1F3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f3hb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1f3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f3h] [1f3h_B] [1f3h_A]
  • SWISS-PROT database: [O15392]
  • Domain organization of [BIRC5_HUMAN] by SWISSPFAM
  • Domain found in 1F3H: [BIR ] by SMART
  • Other resources with information on 1F3H
  • Community annotation for 1F3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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