1F8V	Virus Rna	date	Jul 05, 2000
title	The Structure Of Pariacoto Virus Reveals A Dodecahedral Cage Rna
authors	L.Tang, K.N.Johnson, L.A.Ball, T.Lin, M.Yeager, J.E.Johnson
compound		source
Molecule: Rna Chain: R		Organism_scientific: Pariacato Virus Organism_taxid: 103782
Molecule: Mature Capsid Protein Beta Chain: A, B, C		Organism_scientific: Pariacato Virus Organism_taxid: 103782
Molecule: Mature Capsid Protein Gamma Chain: D, E, F		Organism_scientific: Pariacato Virus Organism_taxid: 103782
symmetry	Space Group: P 1 21 1	R_factor 0.219 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 329.332 346.944 424.893 90.00 90.83 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	CA, SO4	enzyme
note	1F8V is a representative structure
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA., Tang L, Johnson KN, Ball LA, Lin T, Yeager M, Johnson JE, Nat Struct Biol 2001 Jan;8(1):77-83. PMID:11135676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (1f8v.pdb1.gz) 10153 Kb LPC: Ligand-Protein Contacts for 1F8V CSU: Contacts of Structural Units for 1F8V Likely Quarternary Molecular Structure file(s) for 1F8V Structure Factors (13741 Kb) Retrieve 1F8V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F8V from S2C, [Save to disk] Re-refined 1f8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F8V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F8V

VIPERdb: visual, structural and computational analysis of 1F8V Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F8V, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f8v.1, region A:,D [Jmol] [rasmolscript] [script source]     - Domain d1f8v.2, region B:,E [Jmol] [rasmolscript] [script source]     - Domain d1f8v.3, region C:,F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f8v_C] [1f8v_E] [1f8v_B] [1f8v_A] [1f8v_F] [1f8v] [1f8v_R] [1f8v_D] SWISS-PROT database: [Q9J7Z0] Domain organization of [COAT_PAV] by SWISSPFAM

Other resources with information on 1F8V

Community annotation for 1F8V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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