1FAP Complex (Isomerase Kinase) date Mar 15, 1996
title The Structure Of The Immunophilin-Immunosuppressant Fkbp12- Rapamycin Complex Interacting With Human Frap
authors J.Choi, J.Chen, S.L.Schreiber, J.Clardy
compound source
Molecule: Fk506-Binding Protein
Chain: A
Synonym: Fkbp12
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Gene: Human Hippocampal Cdna Library
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) (Novagen)
Expression_system_plasmid: Pgex-3x
Expression_system_gene: Human Hippocampal Cdna Library (Clontech, Palo Alto, Ca);

Molecule: Frap
Chain: B
Fragment: Frb
Synonym: Fkbp-Rapamycin Associated Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Gene: Human Hippocampal Cdna Library
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) (Novagen)
Expression_system_plasmid: Pgex-3x
Expression_system_gene: Human Hippocampal Cdna Library
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.630 52.140 102.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand RAP BindingDB enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1AUE, 1B6C, 4FAP
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the FKBP12-rapamycin complex interacting with the binding domain of human FRAP., Choi J, Chen J, Schreiber SL, Clardy J, Science 1996 Jul 12;273(5272):239-42. PMID:8662507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1fap.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1FAP
  • CSU: Contacts of Structural Units for 1FAP
  • Likely Quarternary Molecular Structure file(s) for 1FAP
  • Retrieve 1FAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FAP from S2C, [Save to disk]
  • View 1FAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FAP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FAP, from MSDmotif at EBI
  • Genome occurence of 1FAP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fapa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fapb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1fap from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fap_B] [1fap_A] [1fap]
  • SWISS-PROT database: [P62942] [P42345]
  • Belongs to the immunophilin-like prolyl:peptidyl isomerase regulator (i-ppi) family according to TCDB.
  • Domain organization of [FKB1A_HUMAN] [FRAP_HUMAN] by SWISSPFAM
  • Domain found in 1FAP: [Rapamycin_bind ] by SMART
  • Other resources with information on 1FAP
  • Community annotation for 1FAP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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