1FSJ Hydrolase date Sep 11, 2000
title Crystal Structure Of The E9 Dnase Domain
authors U.C.Kuhlmann, A.J.Pommer, G.R.Moore, R.James, C.Kleanthous, A.M.Hemmings
compound source
Molecule: Colicin E9
Chain: B, C, D, E
Fragment: C-Terminal Domain Of E9 Colicin
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d (Prj353)
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.222
length a length b length c angle alpha angle beta angle gamma
57.120 82.960 113.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand PO4, ZN enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1EMV, 1MZ8
D, C, E, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1fsj.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1fsj.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (1fsj.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (1fsj.pdb4.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1FSJ
  • CSU: Contacts of Structural Units for 1FSJ
  • Likely Quarternary Molecular Structure file(s) for 1FSJ
  • Structure Factors (348 Kb)
  • Retrieve 1FSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FSJ from S2C, [Save to disk]
  • Re-refined 1fsj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FSJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FSJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fsjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fsjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fsjd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fsje_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1fsj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fsj_C] [1fsj_E] [1fsj] [1fsj_D] [1fsj_B]
  • SWISS-PROT database: [P09883]
  • Belongs to the channel-forming colicin (colicin) family according to TCDB.
  • Domain organization of [CEA9_ECOLX] by SWISSPFAM
  • Domain found in 1FSJ: [HNHc ] by SMART
  • Other resources with information on 1FSJ
  • Community annotation for 1FSJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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