1G1E	Transcription	date	Oct 11, 2000
title	Nmr Structure Of The Human Mad1 Transrepression Domain Sid I With Mammalian Sin3a Pah2 Domain
authors	K.Brubaker, S.M.Cowley, K.Huang, R.N.Eisenman, I.Radhakrishnan
compound		source
Molecule: Mad1 Protein Chain: A Fragment: Sin3 Interaction Domain (Sid) Transrepression Dom Synonym: Max Dimerization Protein Engineered: Yes		Synthetic: Yes Other_details: The Peptide Sequence Was Synthesized Via Aut Methods. The Sequence Is Naturally Found In Homo Sapiens (H
Molecule: Sin3a Chain: B Fragment: Paired Amphipathic Helix 2 (Pah2 Repeat) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet24
method	Solution NMR
related structures	by homologous chain: 1PD7, 1S5R
Gene Ontology	Chain Function Process Component B
Primary reference	Solution structure of the interacting domains of the Mad-Sin3 complex: implications for recruitment of a chromatin-modifying complex., Brubaker K, Cowley SM, Huang K, Loo L, Yochum GS, Ayer DE, Eisenman RN, Radhakrishnan I, Cell 2000 Nov 10;103(4):655-65. PMID:11106735

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk] Biological Unit Coordinates (1g1e.pdb1.gz) 29 Kb CSU: Contacts of Structural Units for 1G1E Original NMR restraints for 1G1E from PDB Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1G1E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1G1E from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1G1E

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1G1E, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g1eb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g1e_B] [1g1e_A] [1g1e] SWISS-PROT database: [Q05195] [Q60520] Domain organization of [MAD1_HUMAN] [SIN3A_MOUSE] by SWISSPFAM

Other resources with information on 1G1E

Community annotation for 1G1E at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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