1PD7	Transcription	date	May 19, 2003
title	Extended Sid Of Mad1 Bound To The Pah2 Domain Of Msin3b
authors	H.Van Ingen, E.Lasonder, J.F.Jansen, A.M.Kaan, C.A.Spronk, H.G.Stunnenberg, G.W.Vuister
compound		source
Molecule: Sin3b Protein Chain: A Fragment: Pah2 Domain (Residues 148-232) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Sin3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Pbl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex2t
Molecule: Mad1 Chain: B Fragment: Extended Sid Domain (Residues 5-28) Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
method	Solution NMR
related structures	by homologous chain: 1E91, 1G1E
Gene Ontology	Chain Function Process Component A
Primary reference	Extension of the binding motif of the sin3 interacting domain of the mad family proteins(,)., Van Ingen H, Lasonder E, Jansen JF, Kaan AM, Spronk CA, Stunnenberg HG, Vuister GW, Biochemistry 2004 Jan 13;43(1):46-54. PMID:14705930

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (914 Kb) [Save to disk] CSU: Contacts of Structural Units for 1PD7 Original NMR restraints for 1PD7 from PDB Retrieve 1PD7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PD7 from S2C, [Save to disk]

View 1PD7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PD7

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1PD7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pd7a_, region A [Jmol] [rasmolscript] [script source] Fold representative 1pd7 from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pd7] [1pd7_A] [1pd7_B] SWISS-PROT database: [Q05195] [Q62141] Domain organization of [MAD1_HUMAN] [SIN3B_MOUSE] by SWISSPFAM

Other resources with information on 1PD7

Community annotation for 1PD7 at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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