1PD7 Transcription date May 19, 2003
title Extended Sid Of Mad1 Bound To The Pah2 Domain Of Msin3b
authors H.Van Ingen, E.Lasonder, J.F.Jansen, A.M.Kaan, C.A.Spronk, H.G.Stunnenberg, G.W.Vuister
compound source
Molecule: Sin3b Protein
Chain: A
Fragment: Pah2 Domain (Residues 148-232)
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Sin3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pbl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex2t

Molecule: Mad1
Chain: B
Fragment: Extended Sid Domain (Residues 5-28)
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
methodSolution NMR
related structures by homologous chain: 1E91, 1G1E

Primary referenceExtension of the binding motif of the sin3 interacting domain of the mad family proteins(,)., Van Ingen H, Lasonder E, Jansen JF, Kaan AM, Spronk CA, Stunnenberg HG, Vuister GW, Biochemistry 2004 Jan 13;43(1):46-54. PMID:14705930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (914 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PD7
  • Original NMR restraints for 1PD7 from PDB
  • Retrieve 1PD7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PD7 from S2C, [Save to disk]
  • View 1PD7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PD7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PD7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pd7a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pd7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pd7] [1pd7_A] [1pd7_B]
  • SWISS-PROT database: [Q05195] [Q62141]
  • Domain organization of [MAD1_HUMAN] [SIN3B_MOUSE] by SWISSPFAM
  • Other resources with information on 1PD7
  • Community annotation for 1PD7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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