1G1U THE 2.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPHA LIGAND BINDING DOMAIN IN TETRAMER IN THE ABSENCE OF LIGAND date
authors Gampe, R.T., Montana, V.G., Lambert, M.H., Wisely, G.B., Milburn, M.V., Xu, H.E.
compound source
symmetry
R_factor
R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
related structures by homologous chain: 1DKF, 1XVP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for autorepression of retinoid X receptor by tetramer formation and the AF-2 helix., Gampe RT Jr, Montana VG, Lambert MH, Wisely GB, Milburn MV, Xu HE, Genes Dev 2000 Sep 1;14(17):2229-41. PMID:10970886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (1g1u.pdb1.gz) 144 Kb
  • CSU: Contacts of Structural Units for 1G1U
  • Likely Quarternary Molecular Structure file(s) for 1G1U
  • Structure Factors (264 Kb)
  • Retrieve 1G1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G1U from S2C, [Save to disk]
  • Re-refined 1g1u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G1U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1G1U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g1ua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1g1ub_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1g1uc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1g1ud_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1g1u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g1u_D] [1g1u_C] [1g1u] [1g1u_B] [1g1u_A]
  • SWISS-PROT database: [P19793]
  • Domain organization of [RXRA_HUMAN] by SWISSPFAM
  • Domain found in 1G1U: [HOLI ] by SMART
  • Other resources with information on 1G1U
  • Community annotation for 1G1U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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