1GD0	Immune System	date	Aug 24, 2000
title	Human Macrophage Migration Inhibitory Factor (Mif)
authors	H.Kurihara, N.Katayama
compound		source
Molecule: Macrophage Migration Inhibitory Factor Chain: A, B, C Synonym: Mif Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.500 67.500 88.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CIT, SO4	enzyme
related structures	by homologous chain: 1MFI
Gene Ontology	Chain Function Process Component A, C, B chemoattractant activity
Primary reference	Coumarin and chromen-4-one analogues as tautomerase inhibitors of macrophage migration inhibitory factor: discovery and X-ray crystallography., Orita M, Yamamoto S, Katayama N, Aoki M, Takayama K, Yamagiwa Y, Seki N, Suzuki H, Kurihara H, Sakashita H, Takeuchi M, Fujita S, Yamada T, Tanaka A, J Med Chem 2001 Feb 15;44(4):540-7. PMID:11170644

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (1gd0.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 1GD0 CSU: Contacts of Structural Units for 1GD0 Likely Quarternary Molecular Structure file(s) for 1GD0 Structure Factors (379 Kb) Retrieve 1GD0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GD0 from S2C, [Save to disk] Re-refined 1gd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GD0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GD0

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1GD0 1GD0A 1GD0B 1GD0C from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GD0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gd0a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1gd0b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1gd0c_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gd0_C] [1gd0] [1gd0_B] [1gd0_A] SWISS-PROT database: [P14174] Domain organization of [MIF_HUMAN] by SWISSPFAM

Other resources with information on 1GD0

Community annotation for 1GD0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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