1GHZ Hydrolase date Jan 22, 2001
title A Novel Serine Protease Inhibition Motif Involving A Multi-C Short Hydrogen Bonding Network At The Active Site
authors B.A.Katz, K.Elrod, C.Luong, M.Rice, R.L.Mackman, P.A.Sprengeler, J J.Hatayte, J.Janc, J.Link, J.Litvak, R.Rai, K.Rice, S.Sideris, E.V W.Young
compound source
Molecule: Beta-Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 31 2 1
R_factor 0.175 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.910 54.910 109.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.39 Å
ligand 120, CA, MG, SO4 BindingDB enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1N6X, 1O2W
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel serine protease inhibition motif involving a multi-centered short hydrogen bonding network at the active site., Katz BA, Elrod K, Luong C, Rice MJ, Mackman RL, Sprengeler PA, Spencer J, Hataye J, Janc J, Link J, Litvak J, Rai R, Rice K, Sideris S, Verner E, Young W, J Mol Biol 2001 Apr 13;307(5):1451-86. PMID:11292354
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1ghz.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1GHZ
  • CSU: Contacts of Structural Units for 1GHZ
  • Likely Quarternary Molecular Structure file(s) for 1GHZ
  • Structure Factors (181 Kb)
  • Retrieve 1GHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GHZ from S2C, [Save to disk]
  • Re-refined 1ghz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GHZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GHZ from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GHZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ghza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ghz_A] [1ghz]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1GHZ: [Tryp_SPc ] by SMART
  • Other resources with information on 1GHZ
  • Community annotation for 1GHZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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