1GOD Hydrolase date Apr 16, 1999
title Monomeric Lys-49 Phospholipase A2 Homologue Isolated From Th Cerrophidion (Bothrops) Godmani
authors R.K.Arni, M.R.M.Fontes, C.Barberato, J.M.Gutierrez, C.Diaz-Oreir R.J.Ward
compound source
Molecule: Protein (Phospholipase A2)
Chain: A
Synonym: Godmt-II
Ec: 3.1.1.4
 Organism_scientific: Cerrophidion Godmani
Organism_taxid: 44722
symmetry Space Group: P 43 21 2
R_factor 0.188 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.560 60.560 84.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1C1J, 1CLP
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceCrystal structure of myotoxin II, a monomeric Lys49-phospholipase A2 homologue isolated from the venom of Cerrophidion (Bothrops) godmani., Arni RK, Fontes MR, Barberato C, Gutierrez JM, Diaz C, Ward RJ, Arch Biochem Biophys 1999 Jun 15;366(2):177-82. PMID:10356281
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1god.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1GOD
  • Likely Quarternary Molecular Structure file(s) for 1GOD
  • Structure Factors (21 Kb)
  • Retrieve 1GOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GOD from S2C, [Save to disk]
  • Re-refined 1god structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GOD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1goda_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1god] [1god_A]
  • SWISS-PROT database: [P81165]
  • Domain organization of [PA22_CERGO] by SWISSPFAM
  • Domain found in 1GOD: [PA2c ] by SMART
    • Other resources with information on 1GOD
  • Community annotation for 1GOD at PDBWiki (http://pdbwiki.org)
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