1GP3 Receptor date Oct 29, 2001
title Human Igf2r Domain 11
authors J.Brown, R.M.Esnouf, M.A.Jones, J.Linnell, K.Harlos, A.B.Hassan, E
compound source
Molecule: Cation-Independent Mannose-6-Phosphate Receptor
Chain: A
Fragment: Igf-II Binding Domain Repeat 11 Residues 1508-165
Synonym: Insulin-Like Growth Factor II Receptor, Ci Man-6-P Receptor, Ci-Mpr, 300 Kda Mannose 6-Phosphate Receptor, Mpr Mpr300;
Engineered: Yes
Other_details: Residues Visible In The Electron Density Map Correspond To Mature Igf2r Residue Numbers 1515 -1647, With Exception Of Residues 1618 - 1621 Where The Density Is Not
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Atcc: 95661
Tissue: Placenta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Origami
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
31.373 49.843 83.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
related structures by homologous chain: 1GQB

Primary referenceStructure of a functional IGF2R fragment determined from the anomalous scattering of sulfur., Brown J, Esnouf RM, Jones MA, Linnell J, Harlos K, Hassan AB, Jones EY, EMBO J 2002 Mar 1;21(5):1054-62. PMID:11867533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1gp3.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1GP3
  • Likely Quarternary Molecular Structure file(s) for 1GP3
  • Structure Factors (63 Kb)
  • Retrieve 1GP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GP3 from S2C, [Save to disk]
  • Re-refined 1gp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GP3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GP3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gp3a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gp3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gp3_A] [1gp3]
  • SWISS-PROT database: [P11717]
  • Belongs to the mannose 6-phosphate receptor (m6pr) family according to TCDB.
  • Domain organization of [MPRI_HUMAN] by SWISSPFAM
  • Other resources with information on 1GP3
  • Community annotation for 1GP3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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