1H6F Transcription Factor date Jun 13, 2001
title Human Tbx3, A Transcription Factor Responsible For Ulnar-Mam Syndrome, Bound To A Palindromic Dna Site
authors M.Coll, C.W.Muller
compound source
Molecule: T-Box Transcription Factor Tbx3
Chain: A, B
Fragment: T-Domain Residues 101-291
Synonym: Tbx3 Transcription Factor, T-Box Protein 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pt7-7

Molecule: 5'-D(Tpapaptptptpcpapcpapcpcptp Apgpgptpgptpgpapapapt)-3';
Chain: C, D
Fragment: Palindromic Binding Site
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.040 104.910 125.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the DNA-bound T-box domain of human TBX3, a transcription factor responsible for ulnar-mammary syndrome., Coll M, Seidman JG, Muller CW, Structure (Camb) 2002 Mar;10(3):343-56. PMID:12005433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1h6f.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1H6F
  • CSU: Contacts of Structural Units for 1H6F
  • Likely Quarternary Molecular Structure file(s) for 1H6F
  • Retrieve 1H6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H6F from S2C, [Save to disk]
  • View 1H6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H6F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H6F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h6fa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h6fb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1h6f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h6f_B] [1h6f_A] [1h6f] [1h6f_D] [1h6f_C]
  • SWISS-PROT database: [O15119]
  • Domain organization of [TBX3_HUMAN] by SWISSPFAM
  • Domain found in 1H6F: [TBOX ] by SMART
  • Other resources with information on 1H6F
  • Community annotation for 1H6F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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