1HMV Nucleotidyltransferase date Dec 15, 1994
title The Structure Of Unliganded Reverse Transcriptase From The Human Immunodeficiency Virus Type 1
authors D.W.Rodgers, S.J.Gamblin, B.A.Harris, S.Ray, J.S.Culp, B.Hellmig, D.J.Woolf, C.Debouck, S.C.Harrison
compound source
Molecule: Hiv-1 Reverse Transcriptase (Subunit P66)
Chain: A, C, E, G
Ec: 2.7.7.49
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Hiv-1 Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Potskf33 Gene: Hiv-1 Pol
Expression_system_gene: Hiv-1 Pol

Molecule: Hiv-1 Reverse Transcriptase (Subunit P51)
Chain: B, D, F, H
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Hiv-1 Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Potskf33 Gene: Hiv-1 Pol
Expression_system_gene: Hiv-1 Pol
symmetry Space Group: C 1 2 1
R_factor 0.254 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.700 162.800 331.800 90.00 105.70 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand MG enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceThe structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1., Rodgers DW, Gamblin SJ, Harris BA, Ray S, Culp JS, Hellmig B, Woolf DJ, Debouck C, Harrison SC, Proc Natl Acad Sci U S A 1995 Feb 14;92(4):1222-6. PMID:7532306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (609 Kb) [Save to disk]
  • Biological Unit Coordinates (1hmv.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (1hmv.pdb2.gz) 155 Kb
  • Biological Unit Coordinates (1hmv.pdb3.gz) 155 Kb
  • Biological Unit Coordinates (1hmv.pdb4.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 1HMV
  • CSU: Contacts of Structural Units for 1HMV
  • Likely Quarternary Molecular Structure file(s) for 1HMV
  • Retrieve 1HMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HMV from S2C, [Save to disk]
  • View 1HMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HMV, from MSDmotif at EBI
  • Genome occurence of 1HMV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hmva2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1hmva1, region A:430-554 [Jmol] [rasmolscript] [script source]
        - Domain d1hmvb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1hmv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hmv_H] [1hmv_G] [1hmv_A] [1hmv_E] [1hmv_B] [1hmv_F] [1hmv] [1hmv_C] [1hmv_D]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Alignments of the sequence of 1HMV with the sequences similar proteins can be viewed for 1HMV's classification [POL_HV1B1] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [POL_HV1B1] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1HMV
  • Community annotation for 1HMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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