1HMV	Nucleotidyltransferase	date	Dec 15, 1994
title	The Structure Of Unliganded Reverse Transcriptase From The Human Immunodeficiency Virus Type 1
authors	D.W.Rodgers, S.J.Gamblin, B.A.Harris, S.Ray, J.S.Culp, B.Hellmig, D.J.Woolf, C.Debouck, S.C.Harrison
compound		source
Molecule: Hiv-1 Reverse Transcriptase (Subunit P66) Chain: A, C, E, G Ec: 2.7.7.49 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Hiv-1 Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Potskf33 Gene: Hiv-1 Pol Expression_system_gene: Hiv-1 Pol
Molecule: Hiv-1 Reverse Transcriptase (Subunit P51) Chain: B, D, F, H Ec: 2.7.7.49 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Hiv-1 Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Potskf33 Gene: Hiv-1 Pol Expression_system_gene: Hiv-1 Pol
symmetry	Space Group: C 1 2 1	R_factor 0.254 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 168.700 162.800 331.800 90.00 105.70 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	MG	enzyme	Transferase E.C.2.7.7.49 BRENDA
Primary reference	The structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1., Rodgers DW, Gamblin SJ, Harris BA, Ray S, Culp JS, Hellmig B, Woolf DJ, Debouck C, Harrison SC, Proc Natl Acad Sci U S A 1995 Feb 14;92(4):1222-6. PMID:7532306

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (609 Kb) [Save to disk] Biological Unit Coordinates (1hmv.pdb1.gz) 156 Kb Biological Unit Coordinates (1hmv.pdb2.gz) 155 Kb Biological Unit Coordinates (1hmv.pdb3.gz) 155 Kb Biological Unit Coordinates (1hmv.pdb4.gz) 155 Kb LPC: Ligand-Protein Contacts for 1HMV CSU: Contacts of Structural Units for 1HMV Likely Quarternary Molecular Structure file(s) for 1HMV Retrieve 1HMV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HMV from S2C, [Save to disk]

View 1HMV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1HMV

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1HMV, from MSDmotif at EBI Genome occurence of 1HMV's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hmva2, region A:1-429 [Jmol] [rasmolscript] [script source]     - Domain d1hmva1, region A:430-554 [Jmol] [rasmolscript] [script source]     - Domain d1hmvb_, region B [Jmol] [rasmolscript] [script source] Fold representative 1hmv from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hmv_A] [1hmv_B] [1hmv_C] [1hmv_D] [1hmv_E] [1hmv_F] [1hmv_G] [1hmv_H] SWISS-PROT database: [P03366] Domain organization of [POL_HV1B1] by SWISSPFAM Alignments of the sequence of 1HMV with the sequences similar proteins can be viewed for 1HMV's classification [POL_HV1B1] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [POL_HV1B1] at ProtoMap. Click on the Cluster number.

Other resources with information on 1HMV

Community annotation for 1HMV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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