1HSM Dna-Binding date Nov 17, 1994
title The Structure Of The Hmg Box And Its Interaction With Dna
authors C.M.Read, P.D.Cary, C.Crane-Robinson, P.C.Driscoll, M.O.M.Carillo, D.G.Norman
compound source
Molecule: High Mobility Group Protein 1
Chain: A
Engineered: Yes
Organism_scientific: Cricetulus Griseus
Organism_common: Chinese Hamster
Organism_taxid: 10029
Gene: Insert Derived By Pcr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5 Alpha
Expression_system_vector_type: Pgex-2t
Expression_system_plasmid: Pgex-2t Gene: Insert Derived By Pcr
methodSolution NMR
ligand BME enzyme
related structures by homologous chain: 1HMF, 1HSN
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1HSM
  • CSU: Contacts of Structural Units for 1HSM
  • Retrieve 1HSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HSM from S2C, [Save to disk]
  • View 1HSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HSM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HSM, from MSDmotif at EBI
  • Genome occurence of 1HSM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hsm__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1hsm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hsm] [1hsm_A]
  • SWISS-PROT database: [P07156]
  • Domain organization of [HMGB1_CRIGR] by SWISSPFAM
  • Domain found in 1HSM: [HMG ] by SMART
  • Other resources with information on 1HSM
  • Community annotation for 1HSM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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