1IGY	Immunoglobulin	date	Oct 09, 1997
title	Structure Of Immunoglobulin
authors	L.J.Harris, A.Mcpherson
compound		source
Molecule: Igg1 Intact Antibody Mab61.1.3 Chain: A, C		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc Other_details: Hybridoma Monoclonal Antibody, Against Pheno
Molecule: Igg1 Intact Antibody Mab61.1.3 Chain: B, D		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc Other_details: Hybridoma Monoclonal Antibody, Against Pheno
symmetry	Space Group: P 1 21 1	R_factor 0.211 R_Free 0.327
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.650 190.660 73.100 90.00 109.66 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	BMA, FUC, FUL, GAL, MAN, NAG, NDG	enzyme
note	1IGY (Molecule of the Month:pdb21)
Gene Ontology	Chain Function Process Component A, C
Primary reference	Crystallographic structure of an intact IgG1 monoclonal antibody., Harris LJ, Skaletsky E, McPherson A, J Mol Biol 1998 Feb 6;275(5):861-72. PMID:9480774

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk] Biological Unit Coordinates (1igy.pdb1.gz) 230 Kb LPC: Ligand-Protein Contacts for 1IGY CSU: Contacts of Structural Units for 1IGY Likely Quarternary Molecular Structure file(s) for 1IGY Retrieve 1IGY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IGY from S2C, [Save to disk]

View 1IGY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IGY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IGY, from MSDmotif at EBI Genome occurence of 1IGY's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1igya2, region A:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1igya1, region A:2-107 [Jmol] [rasmolscript] [script source]     - Domain d1igyb2, region B:114-235 [Jmol] [rasmolscript] [script source]     - Domain d1igyb1, region B:2-113 [Jmol] [rasmolscript] [script source]     - Domain d1igyb3, region B:236-361 [Jmol] [rasmolscript] [script source]     - Domain d1igyb4, region B:363-474 [Jmol] [rasmolscript] [script source]     - Domain d1igyc2, region C:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1igyc1, region C:2-107 [Jmol] [rasmolscript] [script source]     - Domain d1igyd2, region D:114-235 [Jmol] [rasmolscript] [script source]     - Domain d1igyd1, region D:2-113 [Jmol] [rasmolscript] [script source]     - Domain d1igyd3, region D:236-361 [Jmol] [rasmolscript] [script source]     - Domain d1igyd4, region D:363-474 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1igy] [1igy_C] [1igy_B] [1igy_D] [1igy_A] SWISS-PROT database: [P01869] [P01837] Domain organization of [IGH1M_MOUSE] [IGKC_MOUSE] by SWISSPFAM Domains found in 1IGY: [IG_like] [IGv ] by SMART

Other resources with information on 1IGY

Community annotation for 1IGY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1IGY from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---