1IJJ THE X-RAY CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN RABBIT SKELETAL MUSCLE ACTIN AND LATRUNCULIN A AT 2.85 A RESOLUTION date
authors Vorobiev, S.M., Bubb, M.R., Almo, S.C.
compound source
symmetry
R_factor
R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand ATP, LAR, MG enzyme
related structures by homologous chain: 1ATN, 1RFQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePolylysine induces an antiparallel actin dimer that nucleates filament assembly: crystal structure at 3.5-A resolution., Bubb MR, Govindasamy L, Yarmola EG, Vorobiev SM, Almo SC, Somasundaram T, Chapman MS, Agbandje-McKenna M, McKenna R, J Biol Chem 2002 Jun 7;277(23):20999-1006. PMID:11932258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1ijj.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (1ijj.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1IJJ
  • CSU: Contacts of Structural Units for 1IJJ
  • Likely Quarternary Molecular Structure file(s) for 1IJJ
  • Retrieve 1IJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IJJ from S2C, [Save to disk]
    • View 1IJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IJJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IJJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ijja2, region A:147-374 [Jmol] [rasmolscript] [script source]
        - Domain d1ijja1, region A:5-146 [Jmol] [rasmolscript] [script source]
        - Domain d1ijjb1, region B:404-546 [Jmol] [rasmolscript] [script source]
        - Domain d1ijjb2, region B:547-774 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ijj_B] [1ijj] [1ijj_A]
  • SWISS-PROT database: [P68135]
  • Domain organization of [ACTS_RABIT] by SWISSPFAM
  • Domain found in 1IJJ: [ACTIN ] by SMART
    • Other resources with information on 1IJJ
  • Community annotation for 1IJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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